Slims arindam presentaion

Copyright 2011 Digital Enterprise Research Institute. All rights reserved.

Digital Enterprise Research Institute www.deri.ie

Enabling Networked Knowledge

A Semantic Laboratory Information Management

System for Stem Cell ResearchArindam Halder

P.I. : Helena F Deus, Frank Barry



Why Stem cells??



The problems for stem cell researcher



Motivation

Long ,complex and expensive experiments

High failure rates

Absence of effective data sharing

Lack of credible in-silico modeling and simulation tools.



Research Hypothesis

To unify public stem cell resources To create a plug and play architecture for

data access To enable decision support system. To enable agent oriented stem cell

modeling and simulations.



Challenges

Data Incoherence Data deluge Complexity of networks Lack of ‘intelligent’ models Overlapping phenomena

representing different processes

To build an agent-based stem cell model



Architecture

+Mechanical stimulus 1

SPARQL Query

Mediated Ontology+ D2RQ Engine

Rule based Multi agent Modelling and simulation



Current Status

Automation of database mapping and ontology creation Mapping STRING database using D2RQ Concept matching between DB and existing appropriate

ontologies.



Thank You!!!!

Slims arindam presentaion

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